Streptomyces cameroonensis sp. nov., a Geldanamycin Producer That Promotes Theobroma cacao Growth.
Identifieur interne : 000919 ( Main/Exploration ); précédent : 000918; suivant : 000920Streptomyces cameroonensis sp. nov., a Geldanamycin Producer That Promotes Theobroma cacao Growth.
Auteurs : Thaddée Boudjeko ; Romaric Armel Mouafo Tchinda ; Mina Zitouni ; Joëlle Aimée Vera Tchatchou Nana ; Sylvain Lerat ; Carole BeaulieuSource :
- Microbes and environments [ 1347-4405 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN bactérien (composition chimique), ADN bactérien (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN ribosomique 16S (génétique), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Anti-infectieux (métabolisme), Antibiose (MeSH), Benzoquinones (métabolisme), Cacaoyer (croissance et développement), Cacaoyer (microbiologie), Cameroun (MeSH), Chromolaena (microbiologie), Facteur de croissance végétal (métabolisme), Hybridation d'acides nucléiques (MeSH), Lactames macrocycliques (métabolisme), Microbiologie du sol (MeSH), Microscopie électronique à balayage (MeSH), Phylogenèse (MeSH), Phytophthora (croissance et développement), Racines de plante (microbiologie), Streptomyces (classification), Streptomyces (génétique), Streptomyces (isolement et purification), Streptomyces (métabolisme), Techniques de typage bactérien (MeSH).
- MESH :
- composition chimique : ADN bactérien, ADN ribosomique, Streptomyces.
- croissance et développement : Cacaoyer, Phytophthora.
- génétique : ADN bactérien, ADN ribosomique, ARN ribosomique 16S, Streptomyces.
- isolement et purification : Streptomyces.
- microbiologie : Cacaoyer, Chromolaena, Racines de plante.
- métabolisme : Anti-infectieux, Benzoquinones, Facteur de croissance végétal, Lactames macrocycliques, Streptomyces.
- Analyse de regroupements, Analyse de séquence d'ADN, Antibiose, Cameroun, Hybridation d'acides nucléiques, Microbiologie du sol, Microscopie électronique à balayage, Phylogenèse, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Anti-Infective Agents (metabolism), Antibiosis (MeSH), Bacterial Typing Techniques (MeSH), Benzoquinones (metabolism), Cacao (growth & development), Cacao (microbiology), Cameroon (MeSH), Chromolaena (microbiology), Cluster Analysis (MeSH), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Lactams, Macrocyclic (metabolism), Microscopy, Electron, Scanning (MeSH), Nucleic Acid Hybridization (MeSH), Phylogeny (MeSH), Phytophthora (growth & development), Plant Growth Regulators (metabolism), Plant Roots (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Streptomyces (classification), Streptomyces (genetics), Streptomyces (isolation & purification), Streptomyces (metabolism).
- MESH :
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal.
- chemical , genetics : DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- chemical , metabolism : Anti-Infective Agents, Benzoquinones, Lactams, Macrocyclic, Plant Growth Regulators.
- classification : Streptomyces.
- genetics : Streptomyces.
- growth & development : Cacao, Phytophthora.
- isolation & purification : Streptomyces.
- metabolism : Streptomyces.
- microbiology : Cacao, Chromolaena, Plant Roots.
- Antibiosis, Bacterial Typing Techniques, Cameroon, Cluster Analysis, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA, Soil Microbiology.
Abstract
The taxonomy of an actinobacterial strain, designated JJY4T, was established using a polyphasic approach. JJY4T was isolated from the rhizosphere of Chromolaena odorata in Yaoundé (Cameroon) during a project for the selection of biological control agents. Strain JJY4T exhibited antimicrobial activities against bacteria, fungi, and oomycetes. Strain JJY4T also exhibited the traits of plant growth-promoting rhizobacteria such as the solubilization of inorganic phosphate, production of siderophores and indole-3-acetic acid, and 1-aminocyclopropane-1-carboxylate deaminase activity. In planta assays performed on cocoa plantlets confirmed that strain JJY4T exhibited strong abilities to promote plant growth and protect against Phytophthora megakarya, the main causal agent of cocoa pod rot. The formation of rugose-ornamented spores in spiral spore chains by strain JJY4T is a typical feature of members found in the Streptomyces violaceusniger clade and, similar to some members of the clade, strain JJY4T produces geldanamycin. A phylogenetic analysis based on 16S rRNA gene sequences confirmed this classification and suggests that strain JJY4T be added to the subclade constituted of the type strains Streptomyces malaysiensis DSM 41697T and Streptomyces samsunensis DSM 42010T. However, DNA-DNA relatedness and physiological characteristics allowed for the differentiation of strain JJY4T from its closest phylogenetic relatives. Based on these results, strain JJY4T (=NRRL B-65369, =NBRC 112705) appears to represent a novel species in the S. violaceusniger clade for which the proposed name is Streptomyces cameroonensis sp. nov.
DOI: 10.1264/jsme2.ME16095
PubMed: 28260703
PubMed Central: PMC5371071
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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(composition chimique)</term><term>ADN ribosomique (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Analyse de regroupements (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Anti-infectieux (métabolisme)</term><term>Antibiose (MeSH)</term><term>Benzoquinones (métabolisme)</term><term>Cacaoyer (croissance et développement)</term><term>Cacaoyer (microbiologie)</term><term>Cameroun (MeSH)</term><term>Chromolaena (microbiologie)</term><term>Facteur de croissance végétal (métabolisme)</term><term>Hybridation d'acides nucléiques (MeSH)</term><term>Lactames macrocycliques (métabolisme)</term><term>Microbiologie du sol (MeSH)</term><term>Microscopie électronique à balayage (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora (croissance et développement)</term><term>Racines de plante (microbiologie)</term><term>Streptomyces (classification)</term><term>Streptomyces (génétique)</term><term>Streptomyces (isolement et 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bactérien</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The taxonomy of an actinobacterial strain, designated JJY4<sup>T</sup>, was established using a polyphasic approach. JJY4<sup>T</sup> was isolated from the rhizosphere of Chromolaena odorata in Yaoundé (Cameroon) during a project for the selection of biological control agents. Strain JJY4<sup>T</sup> exhibited antimicrobial activities against bacteria, fungi, and oomycetes. Strain JJY4<sup>T</sup> also exhibited the traits of plant growth-promoting rhizobacteria such as the solubilization of inorganic phosphate, production of siderophores and indole-3-acetic acid, and 1-aminocyclopropane-1-carboxylate deaminase activity. In planta assays performed on cocoa plantlets confirmed that strain JJY4<sup>T</sup> exhibited strong abilities to promote plant growth and protect against Phytophthora megakarya, the main causal agent of cocoa pod rot. The formation of rugose-ornamented spores in spiral spore chains by strain JJY4<sup>T</sup> is a typical feature of members found in the Streptomyces violaceusniger clade and, similar to some members of the clade, strain JJY4<sup>T</sup> produces geldanamycin. A phylogenetic analysis based on 16S rRNA gene sequences confirmed this classification and suggests that strain JJY4<sup>T</sup> be added to the subclade constituted of the type strains Streptomyces malaysiensis DSM 41697<sup>T</sup> and Streptomyces samsunensis DSM 42010<sup>T</sup>. However, DNA-DNA relatedness and physiological characteristics allowed for the differentiation of strain JJY4<sup>T</sup> from its closest phylogenetic relatives. Based on these results, strain JJY4<sup>T</sup> (=NRRL B-65369, =NBRC 112705) appears to represent a novel species in the S. violaceusniger clade for which the proposed name is Streptomyces cameroonensis sp. nov.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28260703</PMID><DateCompleted><Year>2017</Year><Month>04</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1347-4405</ISSN><JournalIssue CitedMedium="Internet"><Volume>32</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>Mar</Month><Day>31</Day></PubDate></JournalIssue><Title>Microbes and environments</Title><ISOAbbreviation>Microbes Environ</ISOAbbreviation></Journal><ArticleTitle>Streptomyces cameroonensis sp. nov., a Geldanamycin Producer That Promotes Theobroma cacao Growth.</ArticleTitle><Pagination><MedlinePgn>24-31</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1264/jsme2.ME16095</ELocationID><Abstract><AbstractText>The taxonomy of an actinobacterial strain, designated JJY4<sup>T</sup>, was established using a polyphasic approach. JJY4<sup>T</sup> was isolated from the rhizosphere of Chromolaena odorata in Yaoundé (Cameroon) during a project for the selection of biological control agents. Strain JJY4<sup>T</sup> exhibited antimicrobial activities against bacteria, fungi, and oomycetes. Strain JJY4<sup>T</sup> also exhibited the traits of plant growth-promoting rhizobacteria such as the solubilization of inorganic phosphate, production of siderophores and indole-3-acetic acid, and 1-aminocyclopropane-1-carboxylate deaminase activity. In planta assays performed on cocoa plantlets confirmed that strain JJY4<sup>T</sup> exhibited strong abilities to promote plant growth and protect against Phytophthora megakarya, the main causal agent of cocoa pod rot. The formation of rugose-ornamented spores in spiral spore chains by strain JJY4<sup>T</sup> is a typical feature of members found in the Streptomyces violaceusniger clade and, similar to some members of the clade, strain JJY4<sup>T</sup> produces geldanamycin. A phylogenetic analysis based on 16S rRNA gene sequences confirmed this classification and suggests that strain JJY4<sup>T</sup> be added to the subclade constituted of the type strains Streptomyces malaysiensis DSM 41697<sup>T</sup> and Streptomyces samsunensis DSM 42010<sup>T</sup>. However, DNA-DNA relatedness and physiological characteristics allowed for the differentiation of strain JJY4<sup>T</sup> from its closest phylogenetic relatives. Based on these results, strain JJY4<sup>T</sup> (=NRRL B-65369, =NBRC 112705) appears to represent a novel species in the S. violaceusniger clade for which the proposed name is Streptomyces cameroonensis sp. nov.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Boudjeko</LastName><ForeName>Thaddée</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Laboratory of Phytoprotection and Valorization of Plants Resources, Biotechnology Centre-Nkolbisson.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tchinda</LastName><ForeName>Romaric Armel Mouafo</ForeName><Initials>RA</Initials></Author><Author ValidYN="Y"><LastName>Zitouni</LastName><ForeName>Mina</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Nana</LastName><ForeName>Joëlle Aimée Vera Tchatchou</ForeName><Initials>JA</Initials></Author><Author ValidYN="Y"><LastName>Lerat</LastName><ForeName>Sylvain</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Beaulieu</LastName><ForeName>Carole</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>03</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>Japan</Country><MedlineTA>Microbes Environ</MedlineTA><NlmUniqueID>9710937</NlmUniqueID><ISSNLinking>1342-6311</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000890">Anti-Infective Agents</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D016227">Benzoquinones</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D047029">Lactams, Macrocyclic</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010937">Plant Growth Regulators</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>Z3K3VJ16KU</RegistryNumber><NameOfSubstance UI="C001277">geldanamycin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000890" MajorTopicYN="N">Anti-Infective Agents</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000898" MajorTopicYN="N">Antibiosis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016227" MajorTopicYN="N">Benzoquinones</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002099" MajorTopicYN="N">Cacao</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002163" MajorTopicYN="N">Cameroon</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D036604" MajorTopicYN="N">Chromolaena</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D047029" MajorTopicYN="N">Lactams, Macrocyclic</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008855" MajorTopicYN="N">Microscopy, Electron, Scanning</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010937" MajorTopicYN="N">Plant Growth Regulators</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013302" MajorTopicYN="N">Streptomyces</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName 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